A Portrait of One Scientist as a Graduate Student
a focus on specific tools and techniques invaluable in doing research in a reproducible manner.
Authors: Ivanov, Paul, UC Berkeley
In this talk, I will focus on the how of reproducible research. I will focus on specific tools and techniques I have found invaluable in doing research in a reproducible manner. In particular, I will cover the following general topics (with specific examples in parentheses): version control and code provenance (git), code verification (test driven development, nosetests), data integrity (sha1, md5, git-annex), seed saving ( random seed retention ) distribution of datasets (mirroring, git-annex, metalinks), light-weight analysis capture ( ttyrec, ipython notebook)