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{ "category": "SciPy 2013", "language": "English", "slug": "a-portrait-of-one-scientist-as-a-graduate-student", "speakers": [ "Paul Ivanov" ], "tags": [ "git", "reproducibility" ], "id": 1994, "state": 1, "title": "A Portrait of One Scientist as a Graduate Student", "summary": "a focus on specific tools and techniques invaluable in doing research in a reproducible manner.", "description": "Authors: Ivanov, Paul, UC Berkeley\r\n\r\nTrack: General\r\n\r\nIn this talk, I will focus on the how of reproducible research. I will focus on specific tools and techniques I have found invaluable in doing research in a reproducible manner. In particular, I will cover the following general topics (with specific examples in parentheses): version control and code provenance (git), code verification (test driven development, nosetests), data integrity (sha1, md5, git-annex), seed saving ( random seed retention ) distribution of datasets (mirroring, git-annex, metalinks), light-weight analysis capture ( ttyrec, ipython notebook)", "quality_notes": "", "copyright_text": "http://www.youtube.com/t/terms", "embed": "<object width=\"640\" height=\"390\"><param name=\"movie\" value=\"http://youtube.com/v/Nj_8lwMKD_g?version=3&amp;hl=en_US\"></param><param name=\"allowFullScreen\" value=\"true\"></param><param name=\"allowscriptaccess\" value=\"always\"></param><embed src=\"http://youtube.com/v/Nj_8lwMKD_g?version=3&amp;hl=en_US\" type=\"application/x-shockwave-flash\" width=\"640\" height=\"390\" allowscriptaccess=\"always\" allowfullscreen=\"true\"></embed></object>", "thumbnail_url": "http://i1.ytimg.com/vi/Nj_8lwMKD_g/hqdefault.jpg", "duration": null, "video_ogv_length": null, "video_ogv_url": "", "video_ogv_download_only": false, "video_mp4_length": null, "video_mp4_url": "", "video_mp4_download_only": false, "video_webm_length": null, "video_webm_url": "", "video_webm_download_only": false, "video_flv_length": null, "video_flv_url": "", "video_flv_download_only": false, "source_url": "http://www.youtube.com/watch?v=Nj_8lwMKD_g", "whiteboard": "needs editing", "recorded": "2013-07-02", "added": "2013-07-04T10:08:36", "updated": "2014-04-08T20:28:26.328" }